Analysis of Enhancer–Promoter Interactions using CAGE and RADICL-Seq Technologies | SpringerLink
Solving the transcription start site identification problem with ADAPT-CAGE: a Machine Learning algorithm for the analysis of CAGE data | Scientific Reports
Epigenomes | Free Full-Text | Promoter-Adjacent DNA Hypermethylation Can Downmodulate Gene Expression: TBX15 in the Muscle Lineage
NET-CAGE characterizes the dynamics and topology of human transcribed cis-regulatory elements | Nature Genetics
Homer Software and Data Download
Transcriptionally active enhancers in human cancer cells | Molecular Systems Biology
CAGE - A highly sensitive and precise means of gene expression analysis.
Cap analysis of gene expression (CAGE) sequencing reveals alternative promoter usage in complex disease | bioRxiv
CAGEr: an R package for CAGE (Cap Analysis of Gene Expression) data analysis and promoterome mining
Influence of Rotational Nucleosome Positioning on Transcription Start Site Selection in Animal Promoters | PLOS Computational Biology
Examples of CAGE-inferred promoters and their response to TNF- a... | Download Scientific Diagram
A promoter-level mammalian expression atlas | Nature
Characterization of Arabidopsis thaliana promoter bidirectionality and antisense RNAs by depletion of nuclear RNA decay enzymes | bioRxiv
Solving the transcription start site identification problem with ADAPT-CAGE: a Machine Learning algorithm for analysis of CAGE data | bioRxiv
C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution | Nature Communications
Differential TSS usage. (a) Schematics of differential TSS usage... | Download Scientific Diagram
Enhancer–promoter entanglement explains their transcriptional interdependence | PNAS
Distal CpG islands can serve as alternative promoters to transcribe genes with silenced proximal promoters
Cap analysis of gene expression (CAGE) and noncoding regulatory elements | SpringerLink
Frontiers | Characterizing Promoter and Enhancer Sequences by a Deep Learning Method
Promoter sequence and architecture determine expression variability and confer robustness to genetic variants | bioRxiv
Regional differences in gene expression and promoter usage in aged human brains - ScienceDirect
Systematic analysis of transcription start sites in avian development | PLOS Biology
Alternative promoters in CpG depleted regions pervasively account for epigenetic misregulation of cancer transcriptomes | bioRxiv
